{"id":22925,"date":"2024-06-03T11:16:35","date_gmt":"2024-06-03T03:16:35","guid":{"rendered":"https:\/\/tbenews.com\/tbe\/?p=22925"},"modified":"2024-06-03T11:16:36","modified_gmt":"2024-06-03T03:16:36","slug":"snapshot-week-23-2024-phylogenetic-characterization-of-tbe-virus-from-lithuania","status":"publish","type":"post","link":"https:\/\/tbenews.com\/tbe\/snapshot-week-23-2024-phylogenetic-characterization-of-tbe-virus-from-lithuania\/","title":{"rendered":"Snapshot week 23\/2024 <br\/>Phylogenetic characterization of TBE virus from Lithuania"},"content":{"rendered":"<span class=\"cb-itemprop\" itemprop=\"reviewBody\">\n<p class=\"wp-block-paragraph\">Sidorenko M, et al. Phylogenetic characterisation of tick-borne encephalitis virus from Lithuania. <em>PLoS One<\/em>. 2024;19(2):e0296472. doi:10.1371\/journal.pone.0296472<\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Different subtypes of TBE virus can circulate in the same natural area. In the Baltic countries, the European (Eu), the Siberian (Sib) and the Far Eastern (FE) subtypes coexist in Estonia and Latvia, and here, the vectors <em>Ixodes ricinus <\/em>and <em>I<\/em>. <em>persulcatus<\/em> overlap. However, in Lithuania, only the Eu-subtype has so far been documented even though <em>I<\/em>. <em>ricinus <\/em>and <em>Dermacentor reticulatus <\/em>coexist in this country.<\/p>\n\n\n\n<p class=\"wp-block-paragraph\">A genotypic characterization based on sequences of the glycoprotein E gene and non-structural protein 3 of TBE virus has been carried out from 8846 ticks collected from 81 locations in Lithuania from 2017 to 2019. Sequence analyses revealed that all isolates belonged to the EU virus subtype with a maximum\/minimum identity of 98.7%\/98% and 97.4%\/95.9% to the Neud\u00f6rfl reference strain.<\/p>\n\n\n\n<p class=\"wp-block-paragraph\">On the phylogenetic tree, Lithuanian samples split up into eight clusters. The identity of the determined NS3 gene sequences ranged from 95.5% to 100% and the genetic variation between isolates from different locations was small. TBE virus strains isolated from <em>D<\/em>. <em>reticulatus <\/em>in this study were not specific to this tick species and had a high degree of sequence homology with strains isolated from <em>I<\/em>. <em>ricinus.<\/em><\/p>\n<\/span>","protected":false},"excerpt":{"rendered":"<p>Sidorenko M, et al. Phylogenetic characterisation of tick-borne encephalitis virus from Lithuania. PLoS One. 2024;19(2):e0296472. doi:10.1371\/journal.pone.0296472 Different subtypes of TBE virus can circulate in the same natural area. In the Baltic countries, the European (Eu), the Siberian (Sib) and the Far Eastern (FE) subtypes coexist in Estonia and Latvia, and here, the vectors Ixodes ricinus and I. persulcatus overlap. However, in Lithuania, only the Eu-subtype has so far been documented even though I. ricinus and Dermacentor reticulatus coexist in this country. A genotypic characterization based on sequences of the glycoprotein E gene and non-structural protein 3 of TBE virus has been carried out from 8846 ticks collected from 81 locations in Lithuania from 2017 to 2019. Sequence analyses revealed that all isolates belonged to the EU virus subtype with a maximum\/minimum identity of 98.7%\/98% and 97.4%\/95.9% to the Neud\u00f6rfl reference strain. On the phylogenetic tree, Lithuanian samples split up into eight clusters. The identity of the determined NS3 gene sequences ranged from 95.5% to 100% and the genetic variation between isolates from different locations was small. TBE virus strains isolated from D. reticulatus in this study were not specific to this tick species and had a high degree of sequence homology with strains isolated from I. ricinus.<\/p>\n","protected":false},"author":1409,"featured_media":20968,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"_monsterinsights_skip_tracking":false,"footnotes":""},"categories":[18],"tags":[205,342,1112,1132],"coauthors":[652],"class_list":["post-22925","post","type-post","status-publish","format-standard","has-post-thumbnail","category-snapshot","tag-dermacentor-reticulatus","tag-lithuania","tag-non-structural-protein-3","tag-tbe-virus-subtype"],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v28.1 - https:\/\/yoast.com\/product\/yoast-seo-wordpress\/ -->\n<title>Snapshot week 23\/2024 Phylogenetic characterization of TBE virus from Lithuania - TBE Book<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/tbenews.com\/tbe\/snapshot-week-23-2024-phylogenetic-characterization-of-tbe-virus-from-lithuania\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Snapshot week 23\/2024 Phylogenetic characterization of TBE virus from Lithuania - TBE Book\" \/>\n<meta property=\"og:description\" content=\"Sidorenko M, et al. Phylogenetic characterisation of tick-borne encephalitis virus from Lithuania. PLoS One. 2024;19(2):e0296472. doi:10.1371\/journal.pone.0296472 Different subtypes of TBE virus can circulate in the same natural area. In the Baltic countries, the European (Eu), the Siberian (Sib) and the Far Eastern (FE) subtypes coexist in Estonia and Latvia, and here, the vectors Ixodes ricinus and I. persulcatus overlap. However, in Lithuania, only the Eu-subtype has so far been documented even though I. ricinus and Dermacentor reticulatus coexist in this country. A genotypic characterization based on sequences of the glycoprotein E gene and non-structural protein 3 of TBE virus has been carried out from 8846 ticks collected from 81 locations in Lithuania from 2017 to 2019. Sequence analyses revealed that all isolates belonged to the EU virus subtype with a maximum\/minimum identity of 98.7%\/98% and 97.4%\/95.9% to the Neud\u00f6rfl reference strain. On the phylogenetic tree, Lithuanian samples split up into eight clusters. The identity of the determined NS3 gene sequences ranged from 95.5% to 100% and the genetic variation between isolates from different locations was small. TBE virus strains isolated from D. reticulatus in this study were not specific to this tick species and had a high degree of sequence homology with strains isolated from I. ricinus.\" \/>\n<meta property=\"og:url\" content=\"https:\/\/tbenews.com\/tbe\/snapshot-week-23-2024-phylogenetic-characterization-of-tbe-virus-from-lithuania\/\" \/>\n<meta property=\"og:site_name\" content=\"TBE Book\" \/>\n<meta property=\"article:published_time\" content=\"2024-06-03T03:16:35+00:00\" \/>\n<meta property=\"article:modified_time\" content=\"2024-06-03T03:16:36+00:00\" \/>\n<meta property=\"og:image\" content=\"https:\/\/tbenews.com\/tbe\/wp-content\/uploads\/2023\/12\/TBE-Snapshots.jpg\" \/>\n\t<meta property=\"og:image:width\" content=\"1180\" \/>\n\t<meta property=\"og:image:height\" content=\"250\" \/>\n\t<meta property=\"og:image:type\" content=\"image\/jpeg\" \/>\n<meta name=\"author\" content=\"IT\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:label1\" content=\"Written by\" \/>\n\t<meta name=\"twitter:data1\" content=\"IT\" \/>\n\t<meta name=\"twitter:label2\" content=\"Est. reading time\" \/>\n\t<meta name=\"twitter:data2\" content=\"2 minutes\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\\\/\\\/schema.org\",\"@graph\":[{\"@type\":\"Article\",\"@id\":\"https:\\\/\\\/tbenews.com\\\/tbe\\\/snapshot-week-23-2024-phylogenetic-characterization-of-tbe-virus-from-lithuania\\\/#article\",\"isPartOf\":{\"@id\":\"https:\\\/\\\/tbenews.com\\\/tbe\\\/snapshot-week-23-2024-phylogenetic-characterization-of-tbe-virus-from-lithuania\\\/\"},\"author\":{\"name\":\"IT\",\"@id\":\"https:\\\/\\\/tbenews.com\\\/tbe\\\/#\\\/schema\\\/person\\\/6dd4b733e0a9724f047e3b700d0995f6\"},\"headline\":\"Snapshot week 23\\\/2024 Phylogenetic characterization of TBE virus from Lithuania\",\"datePublished\":\"2024-06-03T03:16:35+00:00\",\"dateModified\":\"2024-06-03T03:16:36+00:00\",\"mainEntityOfPage\":{\"@id\":\"https:\\\/\\\/tbenews.com\\\/tbe\\\/snapshot-week-23-2024-phylogenetic-characterization-of-tbe-virus-from-lithuania\\\/\"},\"wordCount\":211,\"publisher\":{\"@id\":\"https:\\\/\\\/tbenews.com\\\/tbe\\\/#organization\"},\"image\":{\"@id\":\"https:\\\/\\\/tbenews.com\\\/tbe\\\/snapshot-week-23-2024-phylogenetic-characterization-of-tbe-virus-from-lithuania\\\/#primaryimage\"},\"thumbnailUrl\":\"https:\\\/\\\/tbenews.com\\\/tbe\\\/wp-content\\\/uploads\\\/2023\\\/12\\\/TBE-Snapshots.jpg\",\"keywords\":[\"Dermacentor reticulatus\",\"Lithuania\",\"Non-structural protein 3\",\"TBE virus subtype\"],\"articleSection\":[\"Snapshot\"],\"inLanguage\":\"en-US\"},{\"@type\":\"WebPage\",\"@id\":\"https:\\\/\\\/tbenews.com\\\/tbe\\\/snapshot-week-23-2024-phylogenetic-characterization-of-tbe-virus-from-lithuania\\\/\",\"url\":\"https:\\\/\\\/tbenews.com\\\/tbe\\\/snapshot-week-23-2024-phylogenetic-characterization-of-tbe-virus-from-lithuania\\\/\",\"name\":\"Snapshot week 23\\\/2024 Phylogenetic characterization of TBE virus from Lithuania - 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