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Chapter 2a: Virology


          prM protein is a glycosylated precursor of the   host  cell.  It  is  also  believed  to  be  a  main
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          membrane protein  M. The carboxyl terminus   determinant  of  TBEV  virulence.   The  three-
          of  C  protein  serves  as  an  internal  signal   dimensional  structure  of  the  E  protein  was
          sequence  element  leading  the  structural   studied  at  the  resolution  of  2.0  Å  by  X-ray
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          protein  prM  into  the  membrane  of  the   crystallography  (Figure 5). Comparison of the
          endoplasmic  reticulum.  The  viral  protease   crystal structure of E protein and the structure
          NS2B-NS3  cleaves  this  signal  sequence,   of  E  protein  in  the  virion  observed  by
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          releasing the N-terminus of prM protein.  The   cryoelectron microscopy revealed root-mean-
          prM  protein  shows  a  chaperone-like  activity   square  deviations  (RMSD)  of  1.7 Å  for  the
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          during the envelope protein E folding.  The N-  corresponding  Cα  atoms.   The  most
          terminus of the pr is mainly hydrophilic and, in   important  difference  is  in  the  positioning  of
          TBEV, contains a single N-linked glycosylation   domains I–III relative to each other. Whereas
          site  that  appears  to  have  an  important  role   in the crystal structure the domains I, II, and III
          during  virion  assembly  and  release. 31,39,56   Six   are arranged in a line, in the virion the tip of
          cysteine  residues,  all  disulfide-bridged,  are   domain  II  is  bent  15 Å  towards  the  virus
          highly  conserved.  The  C-terminal  region   membrane  (Figure  5A). 119   Such  a  bending  of
          contains  an  ectodomain  and  2  potential    the  ectodomain  in  the  virion  prevents
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          membrane-spanning  domains.   The  cleavage   induction  of  premature  membrane  fusion
          of  prM  into  pr  and  M  occurs  in  the  Golgi   mediated by the E protein. 119  The structure of
          complex  and  is  mediated  by  furin  or  a  furin-  TBEV E protein was found to be highly similar
          like enzyme 57,58  leading to a  conversion from   to  E1  glycoprotein  from  a  distantly  related
          immature  to  mature  fusogenic  and  fully   virus, Semliki Forest virus (family Togaviridae).
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          infectious  viral  particles  (Figure  3).   The  pr   These  proteins  were  defined  as  class  II  virus
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          fragment  is  then  secreted.   A  conserved   fusion  proteins,  distinct  from  previously
          region  in  the  prM  protein  is  a  critical   characterized  class  I  fusion  proteins  such  as
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          molecular  determinant  for  the  assembly  and   hemagglutinin of influenza virus.
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          secretion  of  the  virus.   The  M-protein
                                                      The  protein  forms  2  monomers  anchored  in
          consists  of  an  N-terminal  loop  and  three   the  membrane  by  their  distal  parts  at
          helices (Figure 5B). The first helix is situated as   physiological  pH.  After  virus  uptake  by
          a  perimembrane  and  the  last  two  as  trans-
                                                      receptor-mediated endocytosis into host cells,
          membranes;  however,  the  M-protein  is  not
                                                      acidic  pH  in  endosomes  triggers  irreversible
          exposed at the surface of the viral particle due
                                                      changes in the E protein structure including its
          to its small size and close association with viral   re-arrangement  to  trimeric  forms.  This  leads
          the  envelope  membrane. 119   Two  M-proteins   to  the  initiation  of  the  fusion  process
          together with two E-proteins form a compact
                                                      between  the  viral   and   endosomal   mem-
          heterotetramer,  which  is  the  main  building   62
                                                      brane.  Conserved histidines in the E protein
          block  of  the  virion,  formed  by  head-to-tail
                                                      function  as  molecular  switches  and,  by  their
          dimerization of two E-M heterodimers (Figure
              119                                     protonation  at  acidic  pH,  control  the  fusion
          5C).                                              63
                                                      process.
          The  E  protein  contains  the  major  viral
                                                      Each  E  protein  monomer  is  composed  of  3
          antigens and is the main target for neutralizing
                                                      domains  (I-  III).  Domain  I  is  located  in  the
          antibodies  (although  antibodies  directed   central part of the protein. It is formed by 8
          against  prM/M  and  NS1  also  induce  some   antiparallel  beta  sheets,  contains  the  N-
          protective immunity). Moreover, the E protein   terminus  of  the  protein,  2  disulfide  bridges,
          is responsible for specific binding to a cellular
                                                      and an N-glycosylation site. The function of E
          receptor and penetration of the virus into the
                                                      protein  glycosylation  was  investigated  using
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