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Chapter 2a: Virology


           Figure 6































          Schematic illustration of the TBEV life cycle. (1) Infection begins with the binding of viral particles to specific
          cell-surface  receptors,  which  have  not  yet  been  unequivocally  identified.  (2)  Viral  particles  enter  cells  via
          endocytic  pathway.  (3)  Low  pH  in  the  late  endosome  triggers  conformational  changes  in  the  E  proteins,
          leading to rearrangement of dimers to trimeric forms (fusogenic state) and the subsequent fusion of the viral
          envelope  with  endosomal  membranes,  which  leads  to  virion  uncoating.  (4)  Replication  of  the  virus  occurs
          through the synthesis of anti-sense (negative) RNA, which serves as the template for genome RNA production.
          Replication  complexes  are  localized  in  membranous  structures  within  the  endoplasmic  reticulum  (ER).  (5)
          Assembled nucleocapsids acquire lipid envelopes by budding into the ER lumen. (6) Immature particles pass
          through the Golgi complex. (7) Maturation takes place in the trans-Golgi network, involving the cleavage of
          prM and the reorganization of E proteins into fusion-competent homodimers, leading to a change from spiky
          immature  to  smooth  mature  particles.  (8)  Mature  particles  are  transported  in  cytoplasmic  vesicles  and
          released into the extracellular space by exocytosis.
          Reproduced  from  Ruzek  et  al.,  Antiviral  Res.  2019  Jan  30.  pii:  S0166-3542(18)30447-9.  doi:  10.1016/
          j.antiviral.2019.01.014. with permission from Elsevier.

          development  of  the  functionally  important   SfRNA results from incomplete degradation of
          secondary  RNA  structures  in  the  3′-UTR.   viral RNA by the cellular 5’-3’ exoribonuclease
          Subsequent  formation  of  extended  RNA    XRN1.  The  exoribonuclease  activity  stops  at
          domains evolved as promoters and enhancers   the  highly  ordered  RNA  secondary  structures
          of  virus  replication  determined  by  the   at  the  beginning  of  the  3′-UTR.  SfRNA  is
          selective  requirements  of  the  vertebrate  and   involved  in  modulating  multiple  cellular
          invertebrate hosts. 38,48,49                pathways;  e.g.,  inhibiting  antiviral  activity  of
                                                      type  I  interferons  (IFN)  and  RNAi  pathways,
          Flaviviruses,  including  TBFVs,  are  known  to   facilitating viral pathogenicity. 50
          produce  unique  non-coding  subgenomic  RNA
          (sfRNA),  which  is  derived  from  the  3′-UTR.



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