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Chapter 2a: Virology

17. Zanotto PM, Gould EA, Gao GF, Harvey PH, 27. Allison SL, Tao YJ, O’Riordain G, et al. Two
Holmes EC. Population dynamics of distinct size classes of immature and mature
flaviviruses revealed by molecular subviral particles from tick-borne encephalitis
phylogenies. Proc Natl Acad Sci U S A. virus. J Virol. 2003;77:11357-66.
1996;93:548-53.
28. Heinz FX, Allison SL, Stiasny K, et al.
18. Gould EA, de Lamballerie X, Zanotto PM, Recombinant and virion-derived soluble and
Holmes EC. Evolution, epidemiology, and particulate immunogens for vaccination
dispersal of flaviviruses revealed by molecular against tick-borne encephalitis. Vaccine.
phylogenies. Adv Virus Res. 2001;57:71-103. 1995;13:1636-42.

19. Pettersson JH, Fiz-Palacios O. Dating the origin 29. Heinz FX, Mandl CW. The molecular biology of
of the genus Flavivirus in the light of Beringian tick-borne encephalitis virus. Review article.
biogeography. J Gen Virol. 2014;95(Pt 9):1969 APMIS. 1993;101:735-45.
-82.
30. Černý J, Selinger M, Palus M, et al. Expression
20. Kuno G, Chang GJ, Tsuchiya KR, Karabatsos N, of a second open reading frame present in the
Cropp CB. Phylogeny of the genus flavivirus. J genome of tick-borne encephalitis virus strain
Virol. 1998;72:73-83. Neudoerfl is not detectable in infected cells.
Virus Genes. 2016;52:309-16.
21. Marin MS, Zanotto PM, Gritsun TS, Gould EA.
Phylogeny of TYU, SRE, and CFA virus: 31. Chambers TJ, Hahn CS, Galler R, Rice CM.
different evolutionary rates in the genus Flavivirus genome organization, expression,
Flavivirus. Virology. 1995;206:1133-9. and replication. Annu Rev Microbiol.
1990;44:649-88.
22. Shiu SY, Ayres MD, Gould EA. Genomic
sequence of the structural proteins of louping 32. Tuplin A, Evans DJ, Buckley A, et al.
ill virus: comparative analysis with tick-borne Replication enhancer elements within the
encephalitis virus. Virology. 1991;180:411-5. open reading frame of tick-borne encephalitis
virus and their evolution within the Flavivirus
23. Gould EA, de Lamballerie X, Zanotto PM, genus. Nucleic Acids Res. 2011;39:7034-48.
Holmes EC. Origins, evolution, and vector/host
coadaptations within the genus Flavivirus. Adv 33. Thurner C, Witwer C, Hofacker IL, Stadler PF.
Virus Res. 2003;59:277-314. Conserved RNA secondary structures in
Flaviviridae genomes. J Gen Virol.
24. Slávik I, Mrena E, Mayer V. Studies on Tick- 2004;85:1113-24.
borne encephalitis virus. II. Virus morphology
and some data on virus structure. Acta Virol.
1970;14:8-16. 34. Gritsun TS, Venugopal K, Zanotto PM, et al.
Complete sequence of two tick-borne
flaviviruses isolated from Siberia and the UK:
25. Heinz FX, Stiasny K, Püschner-Auer G, et al. analysis and significance of the 5′ and 3′-UTRs.
Structural changes and functional control of Virus Res. 1997;49:27-39.
the tick-borne encephalitis virus glycoprotein
E by the heterodimeric association with
protein prM. Virology. 1994;198:109-17. 35. Proutski V, Gaunt MW, Gould EA, Holmes EC.
Secondary structure of the 3′-untranslated
region of yellow fever virus: implications for
26. Zhang W, Chipman PR, Corver J, et al. virulence, attenuation and vaccine
Visualization of membrane protein domains development. J Gen Virol. 1997;78:1543-9.
by cryo-electron microscopy of dengue virus.
Nat Struct Biol.2003;10:907-12.

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